Difference between revisions of "Workshop Agenda"

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#Background and motivation
 
#Background and motivation
#* Brief overview of major biological problems BIRN seeks to address
+
#* Brief overview of major biological problems BIRN seeks to address <b>[BIRN]</b>
#* Discuss current capabilities and challenges related to ontologies in BIRN
+
#* Discuss current capabilities and challenges related to ontologies in BIRN <b>[BIRN]</b>
 +
#*      How to Build an Ontology <b>[Barry]</b>
 
#Tools
 
#Tools
#* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects)
+
#*      Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) <b>[BIRN]</b>
#* Expressing biological concepts in terms of an ontology
+
#* Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) <b>[Stanford]</b>
#**   --Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO)
+
#* Expressing biological concepts in terms of an ontology <b>[Stanford]</b>
#**   --Possible future directions (formal relation ontologies and composed annotations)
+
#**   Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) <b>[Stanford]</b>
#**   --Image annotation with ontologies
+
#**   Possible future directions (formal relation ontologies and composed annotations) <b>[Stanford]</b>
 +
#**   Image annotation with ontologies <b>[Stanford]</b>
 
#Content
 
#Content
 
#* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
 
#* Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
#* Best practices; lessons learned from other ontology development projects (Barry Smith)
+
#**      BIRN Ontologies: An Overview <b>[Barry]</b>
 +
#**      The Ontology of Spatial Relations <b>[Barry]</b>
 +
#* Best practices; lessons learned from other ontology development projects <b>[Barry]</b>
 
#Potential Applications: what do we need to get there from here?
 
#Potential Applications: what do we need to get there from here?
 
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
 
#* Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
 
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data
 
#* Computer reasoning with neuroanatomical/spatial component of Neuroscience data

Revision as of 20:50, 27 January 2006

  1. Background and motivation
    • Brief overview of major biological problems BIRN seeks to address [BIRN]
    • Discuss current capabilities and challenges related to ontologies in BIRN [BIRN]
    • How to Build an Ontology [Barry]
  2. Tools
    • Discussion and presentation of tools used by BIRN (e.g., Bonfire, Mediator) [BIRN]
    • Tutorial on Protégé and some of its more advanced features (examples from other ontology projects) [Stanford]
    • Expressing biological concepts in terms of an ontology [Stanford]
      • Example scenarios from current cBiO Core 3 projects (sequence data annotation, PaTO) [Stanford]
      • Possible future directions (formal relation ontologies and composed annotations) [Stanford]
      • Image annotation with ontologies [Stanford]
  3. Content
    • Look at ontologies used by BIRN in depth (send out BIRN ontologies for us to review in advance)
      • BIRN Ontologies: An Overview [Barry]
      • The Ontology of Spatial Relations [Barry]
    • Best practices; lessons learned from other ontology development projects [Barry]
  4. Potential Applications: what do we need to get there from here?
    • Integrate multi-scale, multi-modality (images, molecular, functional) data for discovery
    • Computer reasoning with neuroanatomical/spatial component of Neuroscience data