Difference between revisions of "Processing OBR Resources"

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(Reprocessing: Modification of an existing ResourceAccessTool)
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*Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported    annotations.
 
*Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported    annotations.
 
*Last processed: 3/3/2009.
 
*Last processed: 3/3/2009.
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 +
3. Resource: Pubmed
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*Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
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*Notes:Built a new resource access tool from existing PubMed3AccessTool to populate data from pubmed xml files .
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*Status:Coding verification & local testing in progress.
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*Last processed: 3/10/2009.
  
 
=Writing a new ResourceAccessTools=
 
=Writing a new ResourceAccessTools=

Revision as of 04:44, 10 March 2009

This page is for keeping track of what resources we process and what is done with each ResourceAccessTool. There are three main activities.

Reprocessing: Simple re-run of an existing ResourceAccessTool

1. Resource: CDD

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/4/2009

2. Resource: OMIM

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/4/2009

3. Resource: PharmGKB

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/3/2009

4. Resource: Reactome

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/3/2009

5. Resource: ResearchCrossroads

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/4/2009

6. Resource: UniProt

  • Person responsible: Adrien
  • Status: annotations to process
  • Last processed: 3/3/2009


Reprocessing: Modification of an existing ResourceAccessTool

Examples include GEO, ClinicalTrials, Pubmed.

1. Resource: Clinicaltrials.gov

  • Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra).
  • Notes: Fixed issue of authentication, fixed other xml related issues.
  • Status: Code verification & local testing in progress.
  • Last processed: 3/3/2009.

2. Resource: Geo- GSE

  • Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
  • Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS).
  • Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported annotations.
  • Last processed: 3/3/2009.

3. Resource: Pubmed

  • Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
  • Notes:Built a new resource access tool from existing PubMed3AccessTool to populate data from pubmed xml files .
  • Status:Coding verification & local testing in progress.
  • Last processed: 3/10/2009.

Writing a new ResourceAccessTools

Examples include CaNanoLab.

Ongoing Challenges

Other Updates