Difference between revisions of "Processing OBR Resources"

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m (Reprocessing: Simple re-run of an existing ResourceAccessTool)
(Reprocessing: Modification of an existing ResourceAccessTool)
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=Reprocessing:  Modification of an existing ResourceAccessTool =
 
=Reprocessing:  Modification of an existing ResourceAccessTool =
 
Examples include GEO, ClinicalTrials, Pubmed.
 
Examples include GEO, ClinicalTrials, Pubmed.
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 +
1. Resource: Clinicaltrials.gov
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*Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra).
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*Notes: Fixed issue of authentication, fixed other xml related issues.
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*Status: Code verification & local testing in progress.
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*Last processed: 3/3/2009.
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2. Resource: Geo- GSE
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*Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
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*Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS).
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*Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported    annotations.
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*Last processed: 3/3/2009.
  
 
=Writing a new ResourceAccessTools=
 
=Writing a new ResourceAccessTools=

Revision as of 14:33, 4 March 2009

This page is for keeping track of what resources we process and what is done with each ResourceAccessTool. There are three main activities.

Reprocessing: Simple re-run of an existing ResourceAccessTool

1. Resource: PharmGKB

  • Person responsible: Adrien
  • Status: Completed
  • Last processed: 3/3/2009

2. Resource: Uniprot

  • Person responsible: Adrien
  • Status: Completed
  • Last processed: 3/3/2009

Reprocessing: Modification of an existing ResourceAccessTool

Examples include GEO, ClinicalTrials, Pubmed.

1. Resource: Clinicaltrials.gov

  • Person responsible: Kuladip Yadav(Optra),Sanjay Jadhav(Optra).
  • Notes: Fixed issue of authentication, fixed other xml related issues.
  • Status: Code verification & local testing in progress.
  • Last processed: 3/3/2009.

2. Resource: Geo- GSE

  • Person responsible: Kuladip Yadav(Optra), Sanjay Jadhav(Optra).
  • Notes:Built a new resource access tool to get data from GEO- GSE database(as of now a separate tool not integrated with GDS).
  • Status:Coding is done, the counts and the element table verified by Nigam. Code modifications need to be done for reported annotations.
  • Last processed: 3/3/2009.

Writing a new ResourceAccessTools

Examples include CaNanoLab.

Ongoing Challenges

Other Updates