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Welcome to the '''National Center for Biomedical Ontology (NCBO) public wiki'''. This wiki provides information about collaborative ontology development efforts, as well as user guides and technical documentation for software developed by the NCBO.
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Welcome to the '''National Center for Biomedical Ontology (NCBO) public wiki'''. This wiki provides user guides and technical documentation for software developed by NCBO.
  
Please visit our [http://www.bioontology.org main site] for more information about the NCBO.
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Note that as the NCBO project funding has ended, documentation for some projects or project details (n.b., NCBO BioPortal details) may be out of date. Pease send email to the BioPortal Support List
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Please visit our [http://www.bioontology.org main site] for more information about NCBO.
  
  
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== Software ==
 
== Software ==
To follow is a list of software developed and maintained by the NCBO:
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To follow is a list of software developed and maintained by NCBO:
  
 
* [https://bioportal.bioontology.org BioPortal] - A web-based application for accessing and sharing biomedical ontologies
 
* [https://bioportal.bioontology.org BioPortal] - A web-based application for accessing and sharing biomedical ontologies
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Please refer to our [[BioPortal_Release_Notes|release notes]] page for change logs.
 
Please refer to our [[BioPortal_Release_Notes|release notes]] page for change logs.
 
  
 
== Documentation ==
 
== Documentation ==
  
*[[BioPortal Help|BioPortal]] - get help with the user interface and instructions for commonly performed tasks
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* [[BioPortal Help|BioPortal]] - get help with the user interface and instructions for commonly performed tasks
 
* [http://data.bioontology.org/documentation BioPortal REST API] - see a list of available endpoints with usage instructions
 
* [http://data.bioontology.org/documentation BioPortal REST API] - see a list of available endpoints with usage instructions
 
* [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - read a getting started guide and installation instructions
 
* [[:Category:NCBO_Virtual_Appliance|BioPortal Virtual Appliance]] - read a getting started guide and installation instructions
* [[Using_NCBO_Technology_In_Your_Project|Using the NCBO technologies in your project]] - get ideas for how to employ the NCBO technologies in your website or application
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* [[Using_NCBO_Technology_In_Your_Project|Using NCBO technologies in your project]] - get ideas for how to employ NCBO technologies in your website or application
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* [[SKOSSupport|SKOS support]] - view the specifics of BioPortal's support for SKOS vocabularies
 
* [[SPARQL_BioPortal|BioPortal SPARQL Endpoint]] - read about programmatic submission of SPARQL queries and the named graph structure
 
* [[SPARQL_BioPortal|BioPortal SPARQL Endpoint]] - read about programmatic submission of SPARQL queries and the named graph structure
 
* [[NCBO_Developer_Documentation|Developer documentation]]
 
* [[NCBO_Developer_Documentation|Developer documentation]]
  
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=== Mail Support ===
  
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* [https://mailman.stanford.edu/mailman/listinfo/bioontology-support BioPortal Support List] - sign up to see and request community support for BioPortal
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* [https://mailman.stanford.edu/pipermail/bioontology-support/ BioPortal mailman email archives] - the usual mailman archive format for BioPortal support list
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* [http://ncbo-support.2288202.n4.nabble.com/ BioPortal nabble email archives] - BioPortal support email list archives in easier format to search and navigate
  
 
== Ontology Development Projects ==
 
== Ontology Development Projects ==
  
These are some of the ontology development projects that NCBO has participated in:
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These are some of the ontology development projects that NCBO participated in:
 
   
 
   
 
* [http://bioportal.bioontology.org/ontologies/BRO Biomedical Resource Ontology]
 
* [http://bioportal.bioontology.org/ontologies/BRO Biomedical Resource Ontology]
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* [[CL:Main_Page|Cell Ontology]]
 
* [[CL:Main_Page|Cell Ontology]]
 
* [[SO:Main_Page|Sequence Types and Features Ontology]]
 
* [[SO:Main_Page|Sequence Types and Features Ontology]]
* [[Disease:Main_Page]] - Disease Ontology, and other ontologies pertaining to diseases and disorders
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* [[Disease:Main_Page|Disease Ontology]], and other ontologies pertaining to diseases and disorders
* [[OCI:Main_Page]] - Ontology of Clinical Investigation
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* [[OCI:Main_Page|Ontology of Clinical Investigation]]

Latest revision as of 12:58, 3 January 2018

Welcome to the National Center for Biomedical Ontology (NCBO) public wiki. This wiki provides user guides and technical documentation for software developed by NCBO.

Note that as the NCBO project funding has ended, documentation for some projects or project details (n.b., NCBO BioPortal details) may be out of date. Pease send email to the BioPortal Support List

Please visit our main site for more information about NCBO.


Software

To follow is a list of software developed and maintained by NCBO:

Please refer to our release notes page for change logs.

Documentation

Mail Support

Ontology Development Projects

These are some of the ontology development projects that NCBO participated in: