Difference between revisions of "From OBO to OWL and back"

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(OBO-Edit 2.1)
(Test ontology)
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== Test ontology ==
 
== Test ontology ==
  
Coming soon
+
[http://caro2.googlecode.com/svn/trunk/scratch/tutorial.obo tutorial.obo]
  
 
== Software to install ==
 
== Software to install ==

Revision as of 11:46, 26 July 2011

This page is the location for downloads and instructions for the ICBO 2011 tutorial "From OBO to OWL and back again" to be held on July 27th.

Program

The program, including suggestions for preparatory reading, can be found here:

http://icbo.buffalo.edu/2011/TutorialF.pdf

Slides

Coming soon

Test ontology

tutorial.obo

Software to install

OBO-Edit 2.1

Please use OBO-Edit 2.1beta16.

Note - for (recent versions of?) Windows, the Java Virtual Machine is limited to 1G. If OBO-Edit fails to load in windows with the default memory settings, please re-install with memory set to 1024M.

OBO to OWL conversion tool

Download the latest version (0.3) of the Obo Ontology Release Tool GUI from here:

Installers are available for mac, windows and unix. After installation, you will have two applications:

Protege 4.1

Please install Protege 4.1 release candidate 5 (build 235).

This version of Protege should not need any configuring.

Previous version required configuring to ensure labels (OBO names) are displayed in all components instead of IDs. Try loading an OBO file to test this (it should load straight in, even though the dialog box asks you to choose and OWL file). If you can only see IDs in the class hierarchy, then you should configure following the instructions here:

http://code.google.com/p/caro2/wiki/Getting_started