CTS2 RDF Plugin
Contents
- 1 CTS2 REST Services
- 1.1 CodeSystemCatalogQuery
- 1.2 CodeSystemCatalogRead
- 1.3 CodeSystemCatalogVersionQuery
- 1.4 CodeSystemVersionCatalogRead
- 1.5 EntityDescriptionQuery
- 1.6 EntityDescriptionRead
- 1.7 ValueSetCatalogQuery
- 1.8 ValueSetCatalogRead
- 1.9 ValueSetDefinitionQuery
- 1.10 ValueSetDefinitionRead
- 1.11 ValueSetDefinitionResolutionService
- 1.12 AssociationQuery
- 1.13 AdvancedAssociationQuery
- 2 SVN
CTS2 REST Services
CodeSystemCatalogQuery
- Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems
- Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=nci&filtercomponent=resourceName
- Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?matchvalue=databases&filtercomponent=resourceSynopsis
- Get CodeSystems With Specified Limit: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?maxtoreturn=5
- Get CodeSystems With Specified Limit and Page: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystems?maxtoreturn=5&page=10
CodeSystemCatalogRead
- Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/TGMA
- Read by uri: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030
- Find CodeSystemByURI: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030
- Find CodeSystemByURI with redirect: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystembyuri?uri=http://bioportal.bioontology.org/ontologies/1030&redirect=true
CodeSystemCatalogVersionQuery
- Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions
- Query code system versions of code system: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/versions
- Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=nci&filtercomponent=resourceName
- Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=anatomy&filtercomponent=resourceSynopsis
- CodeSystemCatalogQuery by Description (default) http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?matchvalue=bioinformatics
- CodeSystemCatalogQuery by Name http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystemversions?filtercomponent=resourceName&matchvalue=bioa
- CodeSystemCatalogQuery Version of CodeSystem by CodeSystem URI http://informatics.mayo.edu/cts2/services/bioportal-rdf//codesystembyuri/versions?uri=http://bioportal.bioontology.org/ontologies/1030
- CodeSystemCatalogQuery Version of CodeSystem by CodeSystem URI (with redirect) http://informatics.mayo.edu/cts2/services/bioportal-rdf//codesystembyuri/versions?uri=http://bioportal.bioontology.org/ontologies/1030&redirect=true
CodeSystemVersionCatalogRead
- CodeSystemCatalogRead by Name ** http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/CARO/version/CARO-46255
- CodeSystemCatalogRead by Official Version Id ** http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/CL/version/2011-06-03
EntityDescriptionQuery
- Query with 'description' http://informatics.mayo.edu/cts2/services/bioportal-rdf/entities?matchvalue=swelling
- Get all entities of code system version: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/AIR/version/AIR-42298/entities
- Query entities of code system version with 'keyword' filter: http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/LNC_226_RRF/entities?matchvalue=100
EntityDescriptionRead
- Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/LNC/version/LNC_226_RRF/entity/LP31957-1
- Or using CSV OfficialResourceVersionId : http://informatics.mayo.edu/cts2/rest/codesystem/LNC/version/226/entity/LP31957-1
- NOTE: Does not support Entity lookup by URI (See notes below)
- 'Exists' via HEAD call
ValueSetCatalogQuery
- Query: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets
- ValueSetCatalogQuery by Description (default) http://informatics.mayo.edu/cts2/services/bioportal-rdf//valuesets?matchvalue=subtree
- Query with 'name' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=set&filtercomponent=resourceName
- Query with 'description' filter: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?matchvalue=anatomy&filtercomponent=resourceSynopsis
- Query based on code system restriction: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valuesets?codesystem=SNOMEDCT
ValueSetCatalogRead
ValueSetDefinitionQuery
- Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definitions
- 'Exists' via HEAD call
ValueSetDefinitionRead
- Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157
- 'Exists' via HEAD call
ValueSetDefinitionResolutionService
- Read by name: http://informatics.mayo.edu/cts2/services/bioportal-rdf/valueset/SCTSPA/definition/42157/resolution?resolutiontype=entitydirectory
- 'Exists' via HEAD call
AssociationQuery
- Query 'sourceOf' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/entity/100001001/sourceof
- Query 'children' associations of entity: http://informatics.mayo.edu/cts2/services/bioportal-rdf/codesystem/MSH/version/MSH_2009_2009_02_13_RRF/entity/D006321/children
AdvancedAssociationQuery
- Get root nodes of a code system version: http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=TOP_NODE&direction=FORWARD
- Get graph of focusn node in code system version:http://informatics.mayo.edu/cts2/rest/codesystem/SNOMEDCT/version/SNOMEDCT_2010_01_31_RRF/graph?focus=243796009&direction=FORWARD
- NOTES: Currently only supports direction=FORWARD and depth=1
SVN
SVN url
