CL:Checklist

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Contents

Name Changes

cell by organism

cell by organism CL:0000004 becomes cell by phylum

  • Alex: Y


macrophage (sensu Diptera)

macrophage (sensu Diptera) CL:0000401 becomes dipeteran macrophage

  • Alex: Y


macrophage (CL:0000235) becomes vertebrate macrophage Y

phagocyte (sensu Vertebrata)

phagocyte (sensu Vertebrata) CL:0000518 becomes vertebrate macrophage

  • Alex: Y


phagocyte (sensu Nematoda and Protostomia) becomes invertebrate phagocyte Y cardiac muscle cell (sensu Arthopoda) becomes cardioblast-derived cardiac muscle cell Y epidermal cell (sensu Insecta)– becomess epidemioblast-derived epidermal cell Y

podocyte (sensu Diptera)

podocyte (sensu Diptera) CL:0000391 becomes Dipteran podocyte

  • Alex: Y


podocyte

podocyte CL:0000653 becomes vertebrate podocyte

  • Alex: Y


glioblast (sensu Nematoda and Protostomia)

glioblast (sensu Nematoda and Protostomia) CL:? becomes invertebrate glioblast

  • Alex: Y


glioblast (sensu Vertebrata)

glioblast (sensu Vertebrata) CL:0000339 becomes vertbrate glioblast

  • Alex: Y


glial cell (sensu Nematoda and Protostomia) )

glial cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate glial cell

  • Alex: Y


glial cell (sensu Vertebrata) )

glial cell (sensu Vertebrata) ) CL:? becomes invertebrate glial cell

  • Alex: Y


neuron associated cell (sensu Nematoda and Protostomia) )

neuron associated cell (sensu Nematoda and Protostomia) ) CL:? becomes invertebrate NAS

  • Alex: Y


neuron associated cell (sensu Vertebrata) )

neuron associated cell (sensu Vertebrata) ) CL:? becomes vertebrate NAS

  • Alex: Y


extraembryonic cell/ germ line stem cell )

extraembryonic cell/ germ line stem cell ) CL:? replaced with EEC/primordial germ cell

  • Alex: Y

Obsoletions/Merges

cardioblast (sensu Arthropoda)

cardioblast (sensu Arthropoda) CL:0000465

  • Alex: Y


blood cell (sensu Nematoda and Protostomia)

blood cell (sensu Nematoda and Protostomia) CL:0000390

  • Alex: Y


hemocyte (sensu Nematoda and Protostomia)

hemocyte (sensu Nematoda and Protostomia) CL:0000387

  • Alex: Y


prohemocyte (sensu Nematoda and Protostomia)

prohemocyte (sensu Nematoda and Protostomia) CL:0000385

  • Alex: Y


chemotactic amoeboid cell (sensu Mycetozoa)

chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289

  • Alex: Y


prohemocyte (sensu Nematoda and Protostomia)

prohemocyte (sensu Nematoda and Protostomia) CL:0000385

  • Alex: Y


chemotactic amoeboid cell (sensu Mycetozoa)

chemotactic amoeboid cell (sensu Mycetozoa) CL:0000289

  • Alex: Y


Distal tip cell (sensu nematoda) –

Distal tip cell (sensu nematoda) – CL:0000422

  • Alex: Y


pigment cell (sensu Nematoda and Protostomia)

pigment cell (sensu Nematoda and Protostomia) CL:0000341

  • Alex: Y maybe, but it would be great to get a definition for pigment cell


pigment cell (sensu Vertebrata)

pigment cell (sensu Vertebrata) CL:0000342

  • Alex: Y


visual pigment cell (sensu Nematoda & Protostomia)

visual pigment cell (sensu Nematoda & Protostomia) CL:0001658

  • Alex: Mycetozoa Y


visual pigment cell (sensu Vertebrata)

visual pigment cell (sensu Vertebrata) CL:0000343

  • Alex: Y


non-visual cell (sensu Vertebrata)

non-visual cell (sensu Vertebrata) CL:0000344

  • Alex: Y


receptor cell (sensu Animalia)

receptor cell (sensu Animalia) CL:0000006

  • Alex: Y


sperm cell (sensu Viridiplantae)

sperm cell (sensu Viridiplantae) CL:0000366

  • Alex: Y


spore (sensu Mycetozoa)

spore (sensu Mycetozoa) CL:000029

  • Alex: N, see my email discussion


vegetative cell

vegetative cell CL:0000296

  • Alex: N, no true commonalities here


vegetative cell (sensu Fungi)

vegetative cell (sensu Fungi) CL:0000334

  • Alex: N, no true commonalities here


vegetative cell (sensu Mycetozoa)

vegetative cell (sensu Mycetozoa) CL:0000263

  • Alex: N, no true commonalities here


CNS neuron (sensu Nematoda and Protostomia)

CNS neuron (sensu Nematoda and Protostomia) CL:0000028

  • Alex: Y


CNS neuron (sensu Vertebrata)

CNS neuron (sensu Vertebrata) CL:0000117

  • Alex: Y


neuroblast (sensu Nematoda and Protostomia) Y

neuroblast (sensu Vertebrata)

neuroblast (sensu Vertebrata) CL:0000337

  • Alex: Y


neuroglioblast (sensu Nematoda)

neuroglioblast (sensu Nematoda) CL:0000662

  • Alex: Y


support cell (sensu Nematoda and Protostomia)

support cell (sensu Nematoda and Protostomia) CL:0000378

  • Alex: Y


support cell (sensu Nematoda)

support cell (sensu Nematoda) CL:0000619

  • Alex: Y


female germ line stem cell (sensu Nematoda and Protostomia)

female germ line stem cell (sensu Nematoda and Protostomia) CL:0000088

  • Alex: Y


female germ line stem cell (sensu Vertebrata)

female germ line stem cell (sensu Vertebrata) CL:0000090

  • Alex: Y


germ line stem cell (sensu Nematoda and Protostomia)

germ line stem cell (sensu Nematoda and Protostomia) CL:0000086

  • Alex: Y


germ line stem cell (sensu Vertebrata)

germ line stem cell (sensu Vertebrata) CL:0000085

  • Alex: Y


male germ line stem cell (sensu Nematoda and Protostomia)

male germ line stem cell (sensu Nematoda and Protostomia) CL:0000087

  • Alex: Y


male germ line stem cell (sensu Vertebrata)

male germ line stem cell (sensu Vertebrata) CL:0000089

  • Alex: Y


male germ line stem cell

male germ line stem cell CL:0000016

  • Alex: Y


Cone bipolar cells types 1-9 (sensu mouse) )

Cone bipolar cells types 1-9 (sensu mouse) ) CL:?

  • Alex: Y


cone cell (sensu Endopterygota)

cone cell (sensu Endopterygota) CL:0000718

  • Alex: Y


anterior cone cell (sensu Endopterygota)

anterior cone cell (sensu Endopterygota) CL:0000720

  • Alex: Y


posterior cone cell (sensu Endopterygota)

posterior cone cell (sensu Endopterygota) CL:0000719

  • Alex: Y


equatorial cone cell (sensu Endopterygota)

equatorial cone cell (sensu Endopterygota) CL:0000721

  • Alex: Y

Disjointness violations

Prok/Euk

Adding a disjoint_from axiom between prokaryotic cell and eukaryotic cell. Remove is_a parentage of all violators (eg spore)

  • Chris: Y