Difference between revisions of "Anatomy Ontology Workshop"

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== General Information ==
  
金相显微镜-材料分析的工具
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The National Center for Biomedical Ontology will host a two-day workshop focused on the Ontology of Anatomy. The workshop will take place on September 8-9, 2006 in Seattle. Preliminary discussions are posted [http://www.bioontology.org/wiki/index.php/CARO:Main_Page here]. Listserv archives are available [http://listserv.buffalo.edu/archives/ontology-of-anatomy-list.html here].
上海长方光学仪器厂生产:金相显微镜|倒置金相显微镜|正置金相显微镜|电话:021-68610355|联系人:刘先生|网址: www.chfang.com.cn www.chfang.com.cn  www.shchfang.com www.shchfang.com www.68610299.com www.68610299.com www.chfang.com.cn www.chfang.com.cn  www.shcmm.cnwww.shcmm.cn 
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一、用途:   
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== Participation ==
    4XC金相显微镜主要用于鉴定和分析金属内部结构组织,它是金属学研究金相的重要仪器,是工业部门鉴定产品质量的关键设备,主要用以鉴别和分析各种金属及合金的组织结构,应用于工厂或实验室进行铸件质量鉴定,原材料的检验或对材料处理后金相组织的 研究分析等工作。(更多型号,请参考网站:www.chfang.com  www.shcmm.cn 电话:021-68610299)
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二、系统简介 
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'''PLEASE NOTE THAT REGISTRATION IS CLOSED.'''
  本系统是将精锐的光学显微镜技术、先进的光电转换技术、www.shcmm.cn  www.shcxp.cn  www.shcvm.cn  www.shcbm.cn www.shclm.cn尖端的计算机图像处理技术完美地结合在一起而开发研制成功的一项高科技产品。可以在计算机显示器上很方便地观察金相图像,从而对金相图谱进行分分析,评级等对图片进行输出、打印。 (更多型号,请参考网站:www.chfang.com  电话:021-68552328)www.chfang.com.cn www.chfang.com.cn 
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www.68610299.com www.68610299.com 
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If you have any suggestions or questions about the workshop, please don't hesitate to contact [[User:Neuhaus| Fabian Neuhaus]].
www.chfang.com.cn/produce/metal.htm金相显微镜www.chfang.com.cn/produce/metal.htm金相显微镜 www.shcmm.cn金相显微镜 www.68610299.com/metal.html金相显微镜www.68610299.com/metal.html金相显微镜
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== Aim of the workshop ==
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At the Workshop for the Ontology of Anatomy we want to gather researchers who are actively involved in the development and improvement of particular anatomy ontologies for a variety of organisms. Regardless of organism differences, if we use common methodologies and principles to build our ontologies then, ultimately, this will enable us to tackle the big issue: to recognize homologous anatomical structures of different species.
三、技术参数 
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1.目镜
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The main focus of this workshop is to pave the way for interoperability between the anatomical ontologies developed for various organisms (including human) by agreeing on shared methodologies for building our respective ontologies.  
  目镜管:三目镜管(倾斜30度 眼瞳调节范围 55-75mm)  
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  平场目镜: 10X
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Its objectives are to develop:
2.物镜 www.shcmm.cnwww.shcmm.cn
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  平场消色差物镜:10X、25X、40X、60X
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1. a list of relations (especially part_of) used within anatomical anatomies, including definitions and rules for consistent use within anatomy ontologies ;
3.载物台
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  方台:150X200mm,  
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2. a list of major organizational units of biological organisms at all levels of granular partitions (e.g. biological macromolecule, cell, organ);
  移动范围:15 X 15 mm
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4.照明:库列照明系统、6V20W钨卤素灯、亮度可调  
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3. a representation of developmental stages of organisms; are anatomy and development two separate or one single integrated ontology? If separate what are the relations between them and how should they be applied;
四、系统组成www.shcmm.cnwww.shcmm.cn   
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电脑型金相显微镜(4XCE): 1、金相显微镜 2、适配镜 3、摄像器(CCD) 4、A/D(图像采集) 5、计算机
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4. a method that allows automated reasoners to recognize homologous anatomical structures of different species.
数码相机型金相显微镜(4XCZ): 1、金相显微镜 2、适配镜 3、数码相机(NIKON)
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五、总放大参考倍数 
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In order to meet our objectives, we need to create a common anatomy reference ontology (CARO) designed to ensure interoperability of the anatomy ontologies developed for specific organisms. This common ontology will comprehend both top-level categories and a common set of relations to be used within anatomical ontologies; CARO will be embedded in a set of principles for constructing anatomy ontologies for different organisms at different developmental stages. The discussion will be based on a pre-version of CARO.
  4XCE型: 100--1600倍 (17寸显示器为例)
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  4XCZ型: 100--1500倍 (尼康数码相机 4500型)
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Issues to be addressed include:
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* The Range of CARO and its relation to species specific anatomies
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* Relations and development in CARO
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* The top level CARO universals
www.xianweijin.com/metal.htm金相显微镜www.xianweijin.com/metal.htm金相显微镜  
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* Concrete steps to implement CARO
六、选购件 
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1.150万像素成像系统 2.金相显微镜分析软件
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Please also see the CARO wiki for discussion notes and other information.
  (更多型号,请参考网站:www.chfang.com www.shcmm.cnwww.shcmm.cn 电话:021-68610299)
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http://www.bioontology.org/wiki/index.php/CARO:Main_Page
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== Agenda and Links to Meeting Minutes and Powerpoint Presentations ==
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Minutes and Powerpoints posted on [[Shared_Materials#CARO_September_2006_meeting]]
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Friday
 +
 
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*9: 30am Session I:  Principles of Ontology Design ([http://ontology.buffalo.edu/medo/CARO_Smith.ppt Smith], Mungall)
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*2.00pm Session II: Current state of model organism anatomy ontologies (Haendel, Osumi-Sutherland)
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*Saturday
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*9.00am Session III: CARO a common anatomy reference ontology (Rosse)
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*2pm Session IV: Intelligent grouping of curations and use cases (Haendel, Osumi-Sutherland)
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*4pm Session V: Future Steps (Smith)
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== Participants  ==
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 +
Stuart Aitken  -–  Artificial Intelligence Applications Institute, University of Edinburgh
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Michael Ashburner -– NCBO, University of Cambridge
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Thomas Bittner -– Philosopy, University at Buffalo
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 +
Judith Blake  -– The Jackson Laboratory
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Albert Burger -– Medical Research Council, Human Genetics Unit, Edinburgh
 +
 
 +
Rex Chisholm -– Center for Genetic Medicine, Northwestern University
 +
 
 +
Sherri De Coronado -– National Cancer Institute, Center for Bioinformatics
 +
 
 +
Louis Goldberg -– Oral Biology, University at Buffalo
 +
 
 +
Peter Good -– National Human Genome Research Institute
 +
 
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Melissa Haendel -– Zebrafish Information Network, University of Oregon
 +
 
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Marc Halfon -– Biochemistry, University at Buffalo
 +
 
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Terry Hayamizu  -– The Jackson Laboratory
 +
 
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David Hill -–  The Jackson Laboratory
 +
 
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Ira Kalet -– Radiation Oncology, Biomedical Informatics, University of Washington
 +
 
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Raymond Lee  -– Biology, California Institute of Technology
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Jennifer Leopold -– Computer Science, University of Missouri-Rolla
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Suzanna Lewis -– NCBO, Lawrence Berkeley National Laboratory
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Kitsos Louis -– Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas
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Paula Mabee -– Biology, University of South Dakota
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Anne Maglia -– Biological Sciences, University of Missouri-Rolla
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Onard Mejino -– Structural Informatics Group, University of Washington
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Chris Mungall -– NCBO, Lawrence Berkeley National Laboratory
 +
 
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Fabian Neuhaus -– NCBO, University at Buffalo
 +
 
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Martin Ringwald -– The Jackson Laboratory
 +
 
 +
Cornelius Rosse -– Structural Informatics Group, University of Washington
 +
 
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Indra Neil Sarkar -– Invertebrate Zoology, American Museum of Natural History
 +
 
 +
Nigam Shah -– NCBO, Stanford Medical Informatics
 +
 
 +
Barry Smith -– NCBO, University at Buffalo
 +
 
 +
David Osumi-Sutherland -– Genetics, University of Cambridge
 +
 
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Pantelis Topalis -– Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas
 +
 
 +
Ravensara Travillian -– Structural Informatics Group, University of Washington
 +
 
 +
Peter Vize -– Biology, University of Calgary
 +
 
 +
Monte Westerfield -– Institute of Neuroscience, University of Oregon
 +
 
 +
== Venue ==
 +
The event will be held in Seattle, WA.

Revision as of 23:17, 2 August 2007

General Information

The National Center for Biomedical Ontology will host a two-day workshop focused on the Ontology of Anatomy. The workshop will take place on September 8-9, 2006 in Seattle. Preliminary discussions are posted here. Listserv archives are available here.

Participation

PLEASE NOTE THAT REGISTRATION IS CLOSED.

If you have any suggestions or questions about the workshop, please don't hesitate to contact Fabian Neuhaus.

Aim of the workshop

At the Workshop for the Ontology of Anatomy we want to gather researchers who are actively involved in the development and improvement of particular anatomy ontologies for a variety of organisms. Regardless of organism differences, if we use common methodologies and principles to build our ontologies then, ultimately, this will enable us to tackle the big issue: to recognize homologous anatomical structures of different species.

The main focus of this workshop is to pave the way for interoperability between the anatomical ontologies developed for various organisms (including human) by agreeing on shared methodologies for building our respective ontologies.

Its objectives are to develop:

1. a list of relations (especially part_of) used within anatomical anatomies, including definitions and rules for consistent use within anatomy ontologies ;

2. a list of major organizational units of biological organisms at all levels of granular partitions (e.g. biological macromolecule, cell, organ);

3. a representation of developmental stages of organisms; are anatomy and development two separate or one single integrated ontology? If separate what are the relations between them and how should they be applied;

4. a method that allows automated reasoners to recognize homologous anatomical structures of different species.

In order to meet our objectives, we need to create a common anatomy reference ontology (CARO) designed to ensure interoperability of the anatomy ontologies developed for specific organisms. This common ontology will comprehend both top-level categories and a common set of relations to be used within anatomical ontologies; CARO will be embedded in a set of principles for constructing anatomy ontologies for different organisms at different developmental stages. The discussion will be based on a pre-version of CARO.

Issues to be addressed include:

  • The Range of CARO and its relation to species specific anatomies
  • Relations and development in CARO
  • The top level CARO universals
  • Concrete steps to implement CARO

Please also see the CARO wiki for discussion notes and other information. http://www.bioontology.org/wiki/index.php/CARO:Main_Page

Agenda and Links to Meeting Minutes and Powerpoint Presentations

Minutes and Powerpoints posted on Shared_Materials#CARO_September_2006_meeting

Friday

  • 9: 30am Session I: Principles of Ontology Design (Smith, Mungall)
  • 2.00pm Session II: Current state of model organism anatomy ontologies (Haendel, Osumi-Sutherland)
  • Saturday
  • 9.00am Session III: CARO a common anatomy reference ontology (Rosse)
  • 2pm Session IV: Intelligent grouping of curations and use cases (Haendel, Osumi-Sutherland)
  • 4pm Session V: Future Steps (Smith)

Participants

Stuart Aitken -– Artificial Intelligence Applications Institute, University of Edinburgh

Michael Ashburner -– NCBO, University of Cambridge

Thomas Bittner -– Philosopy, University at Buffalo

Judith Blake -– The Jackson Laboratory

Albert Burger -– Medical Research Council, Human Genetics Unit, Edinburgh

Rex Chisholm -– Center for Genetic Medicine, Northwestern University

Sherri De Coronado -– National Cancer Institute, Center for Bioinformatics

Louis Goldberg -– Oral Biology, University at Buffalo

Peter Good -– National Human Genome Research Institute

Melissa Haendel -– Zebrafish Information Network, University of Oregon

Marc Halfon -– Biochemistry, University at Buffalo

Terry Hayamizu -– The Jackson Laboratory

David Hill -– The Jackson Laboratory

Ira Kalet -– Radiation Oncology, Biomedical Informatics, University of Washington

Raymond Lee -– Biology, California Institute of Technology

Jennifer Leopold -– Computer Science, University of Missouri-Rolla

Suzanna Lewis -– NCBO, Lawrence Berkeley National Laboratory

Kitsos Louis -– Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas

Paula Mabee -– Biology, University of South Dakota

Anne Maglia -– Biological Sciences, University of Missouri-Rolla

Onard Mejino -– Structural Informatics Group, University of Washington

Chris Mungall -– NCBO, Lawrence Berkeley National Laboratory

Fabian Neuhaus -– NCBO, University at Buffalo

Martin Ringwald -– The Jackson Laboratory

Cornelius Rosse -– Structural Informatics Group, University of Washington

Indra Neil Sarkar -– Invertebrate Zoology, American Museum of Natural History

Nigam Shah -– NCBO, Stanford Medical Informatics

Barry Smith -– NCBO, University at Buffalo

David Osumi-Sutherland -– Genetics, University of Cambridge

Pantelis Topalis -– Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas

Ravensara Travillian -– Structural Informatics Group, University of Washington

Peter Vize -– Biology, University of Calgary

Monte Westerfield -– Institute of Neuroscience, University of Oregon

Venue

The event will be held in Seattle, WA.